| Round | Pick | Team | Selection | Pos, '02 Team |
| 11 | 1 | Detroit | Looper, Braden | P, Florida |
| 11 | 2 | St. Louis | Bradford, Chad | P, Oakland |
| 11 | 3 | Colorado | Witasick, Jay | P, San Francisco |
| 11 | 4 | New York (AL) | Benes, Andy | P, St. Louis |
| 11 | 5 | Milwaukee | Hatteberg, Scott | 1B, Oakland |
| 11 | 6 | Boston | Bautista, Danny | OF, Arizona |
| 11 | 7 | Los Angeles | Armas Jr., Tony | P, Montreal |
| 11 | 8 | San Francisco | Cora, Alex | SS, Los Angeles |
| 11 | 9 | Chicago | Politte, Cliff | P, Toronto |
| 12 | 1 | Chicago | Jennings, Jason | P, Colorado |
| 12 | 2 | San Francisco | Sandberg, Jared | 3B, Tampa Bay |
| 12 | 3 | Los Angeles | Hollandsworth, Todd | OF, Texas |
| 12 | 4 | Boston | Rauch, Jon | P, Chicago (AL) |
| 12 | 5 | Milwaukee | Karsay, Steve | P, New York (AL) |
| 12 | 6 | New York (AL) | Colbrunn, Greg | 1B, Arizona |
| 12 | 7 | Colorado | Fick, Robert | OF, Detroit |
| 12 | 8 | St. Louis | Wilson, Craig | OF, Pittsburgh |
| 12 | 9 | Detroit | Vizcaino, Jose | SS, Houston |
| 13 | 1 | Detroit | McGriff, Fred | 1B, Chicago (NL) |
| 13 | 2 | St. Louis | Cirillo, Jeff | 3B, Seattle |
| 13 | 3 | Colorado | Redmond, Mike | C, Florida |
| 13 | 4 | New York (AL) | LaRue, Jason | C, Cincinnati |
| 13 | 5 | Milwaukee | Loretta, Mark | 3B, Houston |
| 13 | 6 | Boston | Cruz, Juan | P, Chicago (NL) |
| 13 | 7 | Los Angeles | Mendoza, Ramiro | P, New York (AL) |
| 13 | 8 | San Francisco | Miller, Damian | C, Arizona |
| 13 | 9 | Chicago | Choi, Hee Seop | 1B, Chicago (NL) |
| 14 | 1 | Chicago | Clayton, Royce | SS, Chicago (AL) |
| 14 | 2 | San Francisco | Day, Zach | P, Montreal |
| 14 | 3 | Los Angeles | Sauerbeck, Scott | P, Pittsburgh |
| 14 | 4 | Boston | Lopez, Felipe | SS, Toronto |
| 14 | 5 | Milwaukee | Stanton, Mike | P, New York (AL) |
| 14 | 6 | New York (AL) | Hampton, Mike | P, Colorado |
| 14 | 7 | Colorado | Gant, Ron | OF, San Diego |
| 14 | 8 | St. Louis | Estes, Shawn | P, Cincinnati |
| 14 | 9 | Detroit | Jensen, Ryan | P, San Francisco |
| 15 | 1 | Detroit | Halama, John | P, Seattle |
| 15 | 2 | St. Louis | Speier, Justin | P, Colorado |
| 15 | 3 | Colorado | Daubach, Brian | 1B, Boston |
| 15 | 4 | New York (AL) | D'Amico, Jeff | P, New York (NL) |
| 15 | 5 | Milwaukee | Rivas, Luis | 2B, Minnesota |
| 15 | 6 | Boston | DeJean, Mike | P, Milwaukee |
| 15 | 7 | Los Angeles | Hasegawa, Shigetoshi | P, Seattle |
| 15 | 8 | San Francisco | Overbay, Lyle | 1B, Arizona |
| 15 | 9 | Chicago | Nelson, Jeff | P, Seattle |
| 16 | 1 | Chicago | Lamb, Mike | 1B, Texas |
| 16 | 2 | San Francisco | Thomas, Frank | 1B, Chicago (AL) |
| 16 | 3 | Los Angeles | Easley, Damion | 2B, Detroit |
| 16 | 4 | Boston | Grieve, Ben | OF, Tampa Bay |
| 16 | 5 | Milwaukee | Young, Kevin | 1B, Pittsburgh |
| 16 | 6 | New York (AL) | Pratt, Todd | C, Philadelphia |
| 16 | 7 | Colorado | LeCroy, Matt | 1B, Minnesota |
| 16 | 8 | St. Louis | Ochoa, Alex | OF, Anaheim |
| 16 | 9 | Detroit | Larkin, Barry | SS, Cincinnati |
| 17 | 1 | Detroit | Grimsley, Jason | P, Kansas City |
| 17 | 2 | St. Louis | Shuey, Paul | P, Los Angeles |
| 17 | 3 | Colorado | Kreuter, Chad | C, Los Angeles |
| 17 | 4 | New York (AL) | Mohr, Dustan | OF, Minnesota |
| 17 | 5 | Milwaukee | Justice, Dave | OF, Oakland |
| 17 | 6 | Boston | Lee, Travis | 1B, Philadelphia |
| 17 | 7 | Los Angeles | Johnson, Charles | C, Florida |
| 17 | 8 | San Francisco | Rivera, Juan | OF, New York (AL) |
| 17 | 9 | Chicago | Helling, Rick | P, Arizona |
| 18 | 1 | Chicago | Perez, Tomas | 2B, Philadelphia |
| 18 | 2 | San Francisco | Glover, Gary | P, Chicago (AL) |
| 18 | 3 | Los Angeles | Yoshii, Masato | P, Montreal |
| 18 | 4 | Boston | Ritchie, Todd | P, Chicago (AL) |
| 18 | 5 | Milwaukee | Burnitz, Jeromy | OF, New York (NL) |
| 18 | 6 | New York (AL) | Echevarria, Angel | 1B, Chicago (NL) |
| 18 | 7 | Colorado | Schoeneweis, Scott | P, Anaheim |
| 18 | 8 | St. Louis | Eyre, Scott | P, San Francisco |
| 18 | 9 | Detroit | Lincoln, Mike | P, Pittsburgh |
| 19 | 1 | Detroit | Castro, Ramon | C, Florida |
| 19 | 2 | St. Louis | Palmeiro, Orlando | OF, Anaheim |
| 19 | 3 | Colorado | Gutierrez, Ricky | 2B, Cleveland |
| 19 | 4 | New York (AL) | Sturtze, Tanyon | P, Tampa Bay |
| 19 | 5 | Milwaukee | Kapler, Gabe | OF, Colorado |
| 19 | 6 | Boston | Glanville, Doug | OF, Philadelphia |
| 19 | 7 | Los Angeles | Jones, Todd | P, Colorado |
| 19 | 8 | San Francisco | Riedling, John | P, Cincinnati |
| 19 | 9 | Chicago | Buchanan, Brian | OF, San Diego |
| 20 | 1 | Chicago | Stephens, John | P, Baltimore |
| 20 | 2 | San Francisco | Cox, Steve | 1B, Tampa Bay |
| 20 | 3 | Los Angeles | Taylor, Reggie | OF, Cincinnati |
| 20 | 4 | Boston | Karros, Eric | 1B, Los Angeles |
| 20 | 5 | Milwaukee | Carrara, Giovanni | P, Los Angeles |
| 20 | 6 | New York (AL) | Ligtenberg, Kerry | P, Atlanta |
| 20 | 7 | Colorado | Gil, Benji | SS, Anaheim |
| 20 | 8 | St. Louis | Franco, Julio | 1B, Atlanta |
| 20 | 9 | Detroit | Conti, Jason | OF, Tampa Bay |
| 21 | 1 | Detroit | Grace, Mark | 1B, Arizona |
| 21 | 2 | St. Louis | Beimel, Joe | P, Pittsburgh |
| 21 | 3 | Colorado | Roberts, Brian | 2B, Baltimore |
| 21 | 4 | New York (AL) | MacDougal, Mike | P, Kansas City |
| 21 | 5 | Milwaukee | Magee, Wendell | OF, Detroit |
| 21 | 6 | Boston | Cornejo, Nate | P, Detroit |
| 21 | 7 | Los Angeles | Merced, Orlando | OF, Houston |
| 21 | 8 | San Francisco | Henson, Drew | 3B, New York (AL) |
| 21 | 9 | Chicago | Merloni, Lou | 2B, Boston |
| 22 | 1 | Chicago | Ginter, Matt | P, Chicago (AL) |
| 22 | 2 | San Francisco | Reynolds, Shane | P, Houston |
| 22 | 3 | Los Angeles | Stevens, Lee | 1B, Cleveland |
| 22 | 4 | Boston | Harvey, Ken | 1B, Kansas City |
| 22 | 5 | Milwaukee | Harris, Willie | 2B, Chicago (AL) |
| 22 | 6 | New York (AL) | Stark, Denny | P, Colorado |
| 22 | 7 | Colorado | Veres, Dave | P, St. Louis |
| 22 | 8 | St. Louis | Weathers, David | P, New York (NL) |
| 22 | 9 | Detroit | Hackman, Luther | P, St. Louis |